PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00278.1.g00310.1.am.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 652aa    MW: 72705.4 Da    PI: 6.4474
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00278.1.g00310.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-1852110357
                                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                     k  ++t+eq+e+Le+l+  +++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  Zpz_sc00278.1.g00310.1.am.mkhc  52 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 110
                                     5678****************************************************996 PP

2START39.71.2e-1320528249124
                                     EEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EE CS
                           START  49 rasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwv 124
                                     +a+  v m+ +++ e+l d++  W +++++ e+      g  g+++l +++++a+++lvp Rdf+++Ry+ ++++g++v
  Zpz_sc00278.1.g00310.1.am.mkhc 205 TAIDWVQMPGMKVIEILKDRP-SWFRDCRSLEVFTMFPAGngGTIELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLV 282
                                     567789999996666666666.***********999999999******************************9999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.28947111IPR001356Homeobox domain
SMARTSM003895.3E-1549115IPR001356Homeobox domain
SuperFamilySSF466896.84E-1651113IPR009057Homeodomain-like
CDDcd000863.11E-1552112No hitNo description
PfamPF000464.5E-1653110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-1754110IPR009057Homeodomain-like
CDDcd146867.22E-6104143No hitNo description
SuperFamilySSF559616.73E-13185286No hitNo description
PfamPF018522.3E-10205282IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-5216285IPR023393START-like domain
PfamPF086706.0E-31555651IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
GRDLRQLLKV EVLGLLHWRE TDTLMAAAVA MRGGSSDSGG GFDKGPGMDS GKYVRYTPEQ  60
VEVLERLYID CPKPSSSRRQ QLLRECPILA NIEPKQIKVW FQNRRCRDKQ RKESSRLQAV  120
NRKLTAMNKL LMEENERLQK QVSQLVHENA HMRQQLQNTS LTNDTSCESN VTTPPNPIRD  180
ASNPSGLLSI AEETYTEFLS KATGTAIDWV QMPGMKVIEI LKDRPSWFRD CRSLEVFTMF  240
PAGNGGTIEL VYMQMYAPTT LVPARDFWTL RYTTTMEDGS LVAWSVPEVL RPLYESSSVV  300
AQKMTTVALR HLRQIAQETS GEVVYALGRQ PAVLRTFSQR LSRGFNDAIS GFNDDGWSIM  360
GGDGIEDVVV ACNSTKKIRN NNNVGITFGA PGGIICAKAS MLLQSVPPAV LVRFLREHRS  420
EWADYNIDAY LASALKASAC LLPGLRPMRF SGGQMILPLA HTVENEEILE VVRLEGQALT  480
HDEALLSRDI HLLQLCTGID EKSVGSSFQL VFAPIDEHFP DDAPLISSGF RVIPLDMKTR  540
VLSGFPEAAT LARWEKPMFT FANKAGLDML ETSLIALQDL TLDKIFDESG RKALFSDISK  600
LMEQGYVYLP SGVCMSGMGR HVSFDQAVAW KVLGEDSNVH CLAFCFVNWS FV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5014300.0AY501430.1 Zea mays rolled leaf1 mRNA, complete cds.
GenBankBT0662870.0BT066287.1 Zea mays full-length cDNA clone ZM_BFc0170B17 mRNA, complete cds.
GenBankKJ7276060.0KJ727606.1 Zea mays clone pUT5466 HB transcription factor (HB133) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986037.10.0PREDICTED: homeobox-leucine zipper protein HOX10
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLK4A5U70.0K4A5U7_SETIT; Uncharacterized protein
STRINGSi034251m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein